Systems Biology: Computational and Mathematical Methods

by E. Mjolsness, P. Baldi, and B. Shapiro

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wiki:chapter_3:emergent_properties_of_small_networks [2013/03/24 18:19] – emjwiki:chapter_3:emergent_properties_of_small_networks [2013/04/03 15:45] (current) – emj
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-    * Goldbeter-Koshland ultrasensitivity +    * {{:wiki:chapter_3:goldbeter-koshland-1981-v3.nb|Goldbeter-Koshland ultrasensitivity}} 
-    * Hill feedback analysis +    * {{:wiki:chapter_3:hillfeedbackanalysis.nb|Hill feedback analysis}} 
-    * Huang and Ferrell 1996 MAPK +    * {{:wiki:chapter_2:huang_ferrell_1996_mapkv2.nb|Huang and Ferrell 1996 MAPK}} 
-    * Najdi 2006 Asp Thr biosynthesis +    * {{:ch_4:nadji_2006_asp_thr_biosynthesis.nb|Najdi 2006 Asp Thr biosynthesis}} 
-    * MAPK cascade in solution+    * MAPK cascade in solution with feedback, according to models of {{:wiki:chapter_3:bardwell_mapk_4.nb|Bardwell}} and {{:wiki:chapter_3:mapk-kholodenko.nb|Kholodenko}}
     * MAPK cascade stochastic     * MAPK cascade stochastic
-    * MAPK cascade on scaffold+    * MAPK cascade on scaffold (old Cellerator {{:wiki:chapter_3:mapk-on-scaffold.nb|model}})
     * more     * more
  
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     * Asp Thr biosynthesis     * Asp Thr biosynthesis
     * elementary behaviors     * elementary behaviors
 +    * Brusselator (Figure 3.13c) {{:wiki:chapter_3:brusselator.nb|model file}} and {{:wiki:chapter_3:brusselator-phase-limit-cycle.pdf|pdf}}.
     * feedback loop nullclines     * feedback loop nullclines
     * repressilator oscillations     * repressilator oscillations
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-==== Bibliography - electronic access - chapter 2 ====+==== Bibliography - electronic access - chapter 3 ====
  
  
-    * [[:wiki:chapter_2:chapter_2_electronic_bibliography|Here]]+    * [[:wiki:chapter_3:chapter_3_electronic_bibliography|Here]]
  
  

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