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Chapter 3: Emergent Properties of Small Networks

Supplementary Material

Electronic Notebooks

	*  [Goldbeter-Koshland ultrasensitivity]
		*  [Hill feedback analysis]
		*  [Huang and Ferrell 1996 MAPK]
		*  [Najdi 2006 Asp Thr biosynthesis]
		*  MAPK cascade in solution with feedback, according to models of [Bardwell] and [Kholodenko]
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Supplementary Material

Electronic Notebooks

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		*  [Introductory example: {A-&gt;B, B-&gt;C]}
		*  [Mass action kinetics]
		*  [Stochastic simulation algorithm (SSA) example]
		*  [PIP3 metabolism]
		*  Analytic solution of 2×2 master equation for binding/unbinding</description>
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        <description>Book I 

Ch 1: Introduction

Ch 2: Kinetics/Dynamics 

Ch 3: Small networks 

Ch 4: Molec. stat mech

Ch 5: Computation

Ch 6: Networks

Ch 7: Morphodynamics

Ch 8: Mito metabolism

 Integrative SB

Appendix: Mathematics

Book II (virtual) 

 Graphs

 Stochastics

 Adv. computation

 Dynamics

Software availability</description>
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Supplementary Material

Electronic Notebooks

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Table of Contents

	*  Chapter 1: Graphs and graph theory
		*  Chapter 2: Stochastic processes and algorithms
		*  Chapter 3: Advanced computation
		*  Chapter 4: Dynamics and model analysis</description>
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Supplementary Material

Electronic Notebooks

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Figures - electronic sources

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Electronic Notebooks

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Supplementary Material

Electronic Notebooks

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Supplementary Material

Electronic Notebooks

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Supplementary Material

Electronic Notebooks

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Exercises

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Electronic Notebooks

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