Table of Contents
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Chapter 3: Emergent Properties of Small Networks
Supplementary Material
Electronic Notebooks
- MAPK cascade in solution with feedback, according to models of Bardwell and Kholodenko
- MAPK cascade stochastic
- MAPK cascade on scaffold (old Cellerator model)
- more
Exercises
- Emergent dynamics
- MAPK exercises
Figures - electronic sources
- MAPK cascade and transfer function
- Asp Thr biosynthesis
- elementary behaviors
- Brusselator (Figure 3.13c) model file and pdf.
- feedback loop nullclines
- repressilator oscillations
- MAPK with feedback transfer functions
- stochastic MAPK
- scaffolded MAPK
Bibliography - electronic access - chapter 3
Text Outline
- 3.1 Network behavior
- 3.2 Elementary network analysis
- 3.3 Small network examples: S-E-P, MAPK, and threonine metabolism
- 3.4 Dynamical consequences of feedback
- 3.5 Building larger networks: MAPK in depth
- 3.6 Summary
