Systems Biology: Computational and Mathematical Methods

by E. Mjolsness, P. Baldi, and B. Shapiro

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
wiki:chapter_3:emergent_properties_of_small_networks [2013/03/24 17:07] – emjwiki:chapter_3:emergent_properties_of_small_networks [2013/04/03 15:45] (current) – emj
Line 11: Line 11:
  
  
-    *  +    * {{:wiki:chapter_3:goldbeter-koshland-1981-v3.nb|Goldbeter-Koshland ultrasensitivity}} 
-    * Analytic+    * {{:wiki:chapter_3:hillfeedbackanalysis.nb|Hill feedback analysis}} 
 +    * {{:wiki:chapter_2:huang_ferrell_1996_mapkv2.nb|Huang and Ferrell 1996 MAPK}} 
 +    * {{:ch_4:nadji_2006_asp_thr_biosynthesis.nb|Najdi 2006 Asp Thr biosynthesis}} 
 +    * MAPK cascade in solution with feedback, according to models of {{:wiki:chapter_3:bardwell_mapk_4.nb|Bardwell}} and {{:wiki:chapter_3:mapk-kholodenko.nb|Kholodenko}} 
 +    * MAPK cascade stochastic 
 +    * MAPK cascade on scaffold (old Cellerator {{:wiki:chapter_3:mapk-on-scaffold.nb|model}}) 
 +    * more
  
  
Line 18: Line 24:
  
  
-    * Trivalent mass action+    * Emergent dynamics 
 +    * MAPK exercises
  
  
Line 24: Line 31:
  
  
-    * S-E-P stochastic simulation+    * MAPK cascade and transfer function 
 +    * Asp Thr biosynthesis 
 +    * elementary behaviors 
 +    * Brusselator (Figure 3.13c) {{:wiki:chapter_3:brusselator.nb|model file}} and {{:wiki:chapter_3:brusselator-phase-limit-cycle.pdf|pdf}}. 
 +    * feedback loop nullclines 
 +    * repressilator oscillations 
 +    * MAPK with feedback transfer functions 
 +    * stochastic MAPK 
 +    * scaffolded MAPK
  
  
-==== Bibliography - electronic access - chapter 2 ====+==== Bibliography - electronic access - chapter 3 ====
  
  
-    * [[:wiki:chapter_2:chapter_2_electronic_bibliography|Here]]+    * [[:wiki:chapter_3:chapter_3_electronic_bibliography|Here]]
  
  

Trace: