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Table of Contents
Chapter 2: Reaction Kinetics and Biological Dynamics
Supplementary Material
Electronic Notebooks
- These all depend on Mathematica(R) and xCellerator. See Software availability
- Analytic solution of 2×2 master equation for binding/unbinding
- Analytic solution of trivalent reaction A+B <–> C
- MAPK cascade model of Huang and Ferrell 1996
Exercises
- Hill functions
- Master equation
- Trivalent mass action
Figures - electronic sources
- Hill functions, n=1 and n=2
- Convergence of bound/unbound probability
- S-E-P deterministic simulation
- S-E-P stochastic simulation
Bibliography - electronic access - chapter 2
Text Outline
- 2.1 Example: Growth factor response
- 2.2 Elementary dynamical models
- 2.3 Mapping biology to mathematics and computation
- 2.4 Causal network dynamics
- 2.5 Summary
