✎ wiki:chapter_2:biological_dynamics_and_reaction_kinetics - Computational Mathematical Systems Biology

Systems Biology: Computational and Mathematical Methods

by E. Mjolsness, P. Baldi, and B. Shapiro

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<h1>Chapter 2: Biological Dynamics and Reaction Kinetics</h1>
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<h2>Supplementary Material</h2>
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<h3>Electronic Notebooks</h3>
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<li class="level1"> Mass action kinetics</li>
<li class="level2"> Stochastic simulation algorithm</li>
<li class="level2"> PIP3 metabolism</li>
<li class="level2"> Analytic solution of 2×2 master equation for binding/unbinding</li>
<li class="level2"> Analytic solution of trivalent reaction A+B &lt;–> C</li>
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<h3>Exercises</h3>
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<li class="level1"> Hill functions</li>
<li class="level2"> Master equation</li>
<li class="level2"> Trivalent mass action</li>
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<h3>Figures - electronic sources</h3>
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<ul>
<li class="level1"> Hill functions, n=1 and n=2</li>
<li class="level2"> Convergence of bound/unbound probability</li>
<li class="level2"> S-E-P deterministic simulation</li>
<li class="level2"> S-E-P stochastic simulation</li>
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<h3>Bibliography - electronic access - chapter 2</h3>
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<li class="level1"> <a href="/doku.php?id=wiki:chapter_2:chapter_2_electronic_bibliography" class="wikilink2" title="wiki:chapter_2:chapter_2_electronic_bibliography" rel="nofollow">Here</a></li>
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<h2>Text Outline</h2>
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<li class="level1"> 2.1 Example: Growth factor response</li>
<li class="level2"> 2.2 Elementary dynamical models</li>
<li class="level2"> 2.3 Mapping biology to mathematics and computation</li>
<li class="level2"> 2.4 Causal network dynamics</li>
<li class="level2"> 2.5 Summary</li>
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<h2>Missing Topics</h2>
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<h2></h2>
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Trace: • biological_dynamics_and_reaction_kinetics

Systems Biology: Computational and Mathematical Methods

by E. Mjolsness, P. Baldi, and B. Shapiro

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