Table of Contents
Chapter 3: Emergent Properties of Small Networks
Supplementary Material
Electronic Notebooks
Exercises
Figures - electronic sources
Bibliography - electronic access - chapter 3
Text Outline
Missing Topics
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Chapter 3: Emergent Properties of Small Networks
Supplementary Material
Electronic Notebooks
Goldbeter-Koshland ultrasensitivity
Hill feedback analysis
Huang and Ferrell 1996 MAPK
Najdi 2006 Asp Thr biosynthesis
MAPK cascade in solution with feedback, according to models of
Bardwell
and
Kholodenko
MAPK cascade stochastic
MAPK cascade on scaffold (old Cellerator
model
)
more
Exercises
Emergent dynamics
MAPK exercises
Figures - electronic sources
MAPK cascade and transfer function
Asp Thr biosynthesis
elementary behaviors
Brusselator (Figure 3.13c)
model file
and
pdf
.
feedback loop nullclines
repressilator oscillations
MAPK with feedback transfer functions
stochastic MAPK
scaffolded MAPK
Bibliography - electronic access - chapter 3
Here
Text Outline
3.1 Network behavior
3.2 Elementary network analysis
3.3 Small network examples: S-E-P, MAPK, and threonine metabolism
3.4 Dynamical consequences of feedback
3.5 Building larger networks: MAPK in depth
3.6 Summary
Missing Topics