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Table of Contents
Chapter 2: Biological Dynamics and Reaction Kinetics
Supplementary Material
Electronic Notebooks
- Mass action kinetics
- Stochastic simulation algorithm
- PIP3 metabolism
- Analytic solution of 2×2 master equation for binding/unbinding
- Analytic solution of trivalent reaction A+B <–> C
Exercises
- Hill functions
- Master equation
- Trivalent mass action
Figures: sources
- Hill functions, n=1 and n=2
- Convergence of bound/unbound probability
- S-E-P deterministic simulation
- S-E-P stochastic simulation
Text Outline
- Example: Growth factor response
- Elementary dynamical models
- Mapping biology to mathematics and computation
- Causal network dynamics
- Summary
